Index

A

AbsolutepathError

C

checkapp() (in module longbow.applications) checkconnections() (in module longbow.shellwrappers) checkenv() (in module longbow.scheduling)

cleanup() (in module longbow.staging) CommandlineargsError ConfigurationError

D

defaultfilename() (in module longbow.apps.gromacs) delete() (in module longbow.schedulers.lsf) (in module longbow.schedulers.pbs) (in module longbow.schedulers.sge) (in module longbow.schedulers.slurm) (in module longbow.schedulers.soge) (in module longbow.scheduling)

detectsubstitutions() (in module longbow.apps.charmm) (in module longbow.apps.lammps) DirectorynotfoundError DisconnectException download() (in module longbow.shellwrappers)

E

ExecutableError

F

file_parser() (in module longbow.apps.charmm) (in module longbow.apps.lammps) (in module longbow.apps.namd)

H

HandlercheckError

J

JobdeleteError

JobsubmitError

L

launcher() (in module longbow.entrypoints) loadconfigs() (in module longbow.configuration) localcopy() (in module longbow.shellwrappers) LocalcopyError localdelete() (in module longbow.shellwrappers) LocaldeleteError locallist() (in module longbow.shellwrappers) LocallistError longbow module longbow() (in module longbow.entrypoints) longbow.applications module longbow.apps module longbow.apps.amber module longbow.apps.charmm module longbow.apps.chemshell module longbow.apps.desmond module longbow.apps.gromacs module longbow.apps.lammps module

longbow.apps.namd module longbow.configuration module longbow.entrypoints module longbow.exceptions module longbow.schedulers module longbow.schedulers.lsf module longbow.schedulers.pbs module longbow.schedulers.sge module longbow.schedulers.slurm module longbow.schedulers.soge module longbow.scheduling module longbow.shellwrappers module longbow.staging module

M

module longbow longbow.applications longbow.apps longbow.apps.amber longbow.apps.charmm longbow.apps.chemshell longbow.apps.desmond longbow.apps.gromacs longbow.apps.lammps longbow.apps.namd longbow.configuration longbow.entrypoints longbow.exceptions longbow.schedulers longbow.schedulers.lsf longbow.schedulers.pbs longbow.schedulers.sge longbow.schedulers.slurm longbow.schedulers.soge longbow.scheduling longbow.shellwrappers longbow.staging

monitor() (in module longbow.scheduling)

P

PluginattributeError prepare() (in module longbow.schedulers.lsf) (in module longbow.schedulers.pbs) (in module longbow.schedulers.sge) (in module longbow.schedulers.slurm) (in module longbow.schedulers.soge) (in module longbow.scheduling)

processconfigs() (in module longbow.configuration) processjobs() (in module longbow.applications)

Q

QueuemaxError

R

recovery() (in module longbow.entrypoints) remotecopy() (in module longbow.shellwrappers) RemotecopyError remotedelete() (in module longbow.shellwrappers) RemotedeleteError

remotelist() (in module longbow.shellwrappers) RemotelistError RemoteworkdirError RequiredinputError RsyncError rsyncuploadhook() (in module longbow.apps.chemshell)

S

saveconfigs() (in module longbow.configuration) saveini() (in module longbow.configuration) SchedulercheckError sendtorsync() (in module longbow.shellwrappers) sendtoshell() (in module longbow.shellwrappers) sendtossh() (in module longbow.shellwrappers) SSHError stage_downstream() (in module longbow.staging) stage_upstream() (in module longbow.staging) StagingError

status() (in module longbow.schedulers.lsf) (in module longbow.schedulers.pbs) (in module longbow.schedulers.sge) (in module longbow.schedulers.slurm) (in module longbow.schedulers.soge) submit() (in module longbow.schedulers.lsf) (in module longbow.schedulers.pbs) (in module longbow.schedulers.sge) (in module longbow.schedulers.slurm) (in module longbow.schedulers.soge) (in module longbow.scheduling)

U

update() (in module longbow.entrypoints)

UpdateExit upload() (in module longbow.shellwrappers)